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Table 3 The fraction of blocked and completely blocked genes, both FN and non-FN.

From: Three factors underlying incorrect in silico predictions of essential metabolic genes

Organism

Media

Fraction of non-FN genes blocked

Fraction of FN genes blocked

Fraction of non-FN genes completely blocked

Fraction of FN genes completely blocked

E. coli

glucose MM

0.36

0.37

0.09

0.10

 

glycerol MM

0.38

0.37

0.10

0.08

S. cerevisiae

glucose

0.39

0.67

0.13

0.28

 

glucose (anaerobic)

0.45

0.74

0.18

0.31

 

galactose

0.37

0.64

0.14

0.21

 

glycerol

0.38

0.64

0.14

0.25

 

ethanol

0.37

0.71

0.13

0.28

 

rich

0.39

0.69

0.13

0.29

H. pylori

rich

0.17

0.13

0.01

0

S. aureus

rich (Forsyth et al.)

0.39

0.56

0.13

0.19

 

rich (Ji et al.)

0.39

1.00

0.13

0.6

M. tuberculosis

Middlebrook

0.29

0.40

0.07

0.07

B. subtilis

rich

0.43

0.19

0.12

0.17