From: Three factors underlying incorrect in silico predictions of essential metabolic genes
Organism | Media | Fraction of non-FN genes blocked | Fraction of FN genes blocked | Fraction of non-FN genes completely blocked | Fraction of FN genes completely blocked |
---|---|---|---|---|---|
E. coli | glucose MM | 0.36 | 0.37 | 0.09 | 0.10 |
glycerol MM | 0.38 | 0.37 | 0.10 | 0.08 | |
S. cerevisiae | glucose | 0.39 | 0.67 | 0.13 | 0.28 |
glucose (anaerobic) | 0.45 | 0.74 | 0.18 | 0.31 | |
galactose | 0.37 | 0.64 | 0.14 | 0.21 | |
glycerol | 0.38 | 0.64 | 0.14 | 0.25 | |
ethanol | 0.37 | 0.71 | 0.13 | 0.28 | |
rich | 0.39 | 0.69 | 0.13 | 0.29 | |
H. pylori | rich | 0.17 | 0.13 | 0.01 | 0 |
S. aureus | rich (Forsyth et al.) | 0.39 | 0.56 | 0.13 | 0.19 |
rich (Ji et al.) | 0.39 | 1.00 | 0.13 | 0.6 | |
M. tuberculosis | Middlebrook | 0.29 | 0.40 | 0.07 | 0.07 |
B. subtilis | rich | 0.43 | 0.19 | 0.12 | 0.17 |