Figure 7

The HFPNe modeling rules to convert from TP reactions to CSML processes. The columns show the rule number, the effect terms used in TP, the corresponding molecular event in CSO, and the HFPNe diagram. In the third column, the molecular event is prefixed with "ME_" and the role of the process is with "MR_." In the HFPNe diagram, a circle indicates one or more participants involved in a process: i for tp:reactants, o for tp:produces, and e for tp:enzyme in TP. A rectangle describes a process. The inferred entities for the corresponding process are shown in colored circles. If a process has a specific role, the output connector is shown with a colored circle.