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Table 1 List of viral reactions and metabolites.

From: Metabolic investigation of host/pathogen interaction using MS2-infected Escherichia coli

Name

Description

Metabolic Reactions

 

viralA

(35) ala-L + (29) arg-L + (17) asn-L + (13) asp-L + (3) cys-L + (18) gln-L + (17) glu-L + (28) gly + (5) his-L + (16) ile-L + (36) leu-L + (14) lys-L + (8) met-L + (16) phe-L + (17) pro-L + (36) ser-L + (27) thr-L + (12) trp-L + (16) tyr-L + (30) val-L → mat_v

viralC

(14) ala-L + (4) arg-L + (10) asn-L + (4) asp-L + (2) cys-L + (6) gln-L + (5) glu-L + (9) gly + (8) ile-L + (7) leu-L + (6) lys-L + (3) met-L + (4) phe-L + (6) pro-L + (13) ser-L + (9) thr-L + (2) trp-L + (4) tyr-L + (14) val-L → coat_v

viralL

(3) ala-L + (8) arg-L + (2) asn-L + asp-L + cys-L + (9) gln-L + (3) glu-L + his-L + (3) ile-L + (12) leu-L + (2) lys-L + met-L + (5) phe-L + (4) pro-L + (6) ser-L + (9) thr-L + (2) tyr-L + (3) val-L → lys_v

viralR

(41) ala-L + (42) arg-L + (18) asn-L + (33) asp-L + (7) cys-L + (15) gln-L + (22) glu-L + (44) gly + (10) his-L + (32) ile-L + (50) leu-L + (25) lys-L + (10) met-L + (28) phe-L + (27) pro- L + (48) ser-L + (31) thr-L + (9) trp-L + (21) tyr-L + (32) val- L → rep_v

viralposRNA

(834) atp + (933) ctp + (927) gtp + (875) utp → posRNA_v

viralnegRNA

(875) atp + (927) ctp + (933) gtp + (834) utp → negRNA_v

Exchange Reactions

 

EXviralA

mat_v ↔

EXviralC

coat_v ↔

EXviralL

lys_v ↔

EXviralR

rep_v ↔

EXviralposRNA

posRNA_v ↔

EXviralnegRNA

negRNA_v ↔

Viral Metabolites

 

mat_v

viral maturation protein

coat_v

viral coat protein

Lys_v

viral lysis protein

rep_v

viral replicase protein

posRNA_v

positive sense viral RNA genome

negRNA_v

negative sense viral RNA genome