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Table 1 Summarized comparison of TPEs and experimental data

From: Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network

Perturbation A B
Hnf6_KD 9/14 0.6429
Otx_KD 1/2 0.5000
FoxA_KD 9/16 0.5625
TBr_KD 4/7 0.5714
Alx1_KD 11/17 0.6471
Gcm_KD 7/11 0.6364
Hox_KD 6/13 0.4615
Bra_KD 8/12 0.6667
Dri_KD 4/16 0.2500
SoxB1_KD 2/5 0.4000
Ets1_KD 2/18 0.1111
Blimp1_KD 3/9 0.3333
Eve_KD 3/8 0.3750
GataE_KD 19/28 0.6786
Snail_KD 2/2 1.0000
FoxB_KD 0/2 0.0000
GataC_KD 0/2 0.0000
Pmar1_KD 0/2 0.0000
Brn_KD 0/2 0.0000
Pmar1_MOE 11/28 0.3929
Alx1_MOE 5/15 0.3333
SoxB1_MOE 7/39 0.1795
total 113/268 0.4216
total KD 90/186 0.4839
total MOE 23/82 0.2805
  1. Agreement between experimental data and topological perturbation effects. Column A lists matches and total experimental data points, column B indicates the percentage of matches. The last three lines indicate results for all perturbations, for all knockdown perturbations and for all MOE perturbations.