Table 10 GO Enrichment of clusters found in the pathogen stress network
From: Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network
Cluster ID | Cluster Size | Enriched GO Terms | Percent of Genes with Enriched GO Terms | Corrected Pvalue |
|---|---|---|---|---|
1 | 45 | protein amino acid phosphorylation; cell communication; defense response; response to biotic stimulus; protein serine/threonine kinase activity; plasma membrane | 24.44%; 22.22%; 17.77%; 17.77%; 13.33%; 13.33% | 0.005; 0.01; 0.01; 0.002; 0.023; 0.047; |
2 | 72 | kinase activity; plasma membrane | 20.83%; 11.11% | 0.01; 0.017; |
3 | 61 | kinase activity | 21.31% | 0.014; |
4 | 94 | plastid; P-P-bond-hydrolysis-driven transmembrane transporter activity; cation-transporting ATPase activity | 28.72%; 7.44%; 4.25% | 0.002; 0.025; 0.026; |
5 | 117 | chloroplast; protein complex; cytosolic part; systemic acquired resistance | 31.62%; 17.94%; 5.98%; 4.27% | 0.001; 0.001; 0.014; 0.002; |
6 | 83 | ribosome; organelle subcompartment; ribosome biogenesis and assembly; photosynthesis | 20.48%; 18.07%; 10.84%; 9.63% | 0.001; 0.001; 0.002; 0.001; |
7 | 84 | plastid; ribosome; cytosolic part | 38.09%; 14.28%; 9.52% | 0.001; 0.001; 0.002; |
8 | 54 | chloroplast; protein complex; photosynthesis; small ribosomal subunit | 44.44%; 25.92%; 16.66%; 7.4% | 0.001; 0.002; 0.001; 0.029; |
9 | 6 | None | None | None |
10 | 25 | None | None | None |
11 | 11 | structural constituent of ribosome; cytosolic part | 81.81%; 54.54% | 0.001; 0.001; |
12 | 26 | plastid part; organelle membrane | 30.76%; 30.76% | 0.002; 0.002; |
13 | 6 | None | None | None |
14 | 5 | None | None | None |
15 | 4 | None | None | None |