Table 5 GO Enrichment of clusters found in the 0.4 co-expression network
From: Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network
Network tscore threshold | Cluster ID | Cluster Size | Enriched GO Terms | Percent of Genes with Enriched GO Terms |
|---|---|---|---|---|
0.4 | 1 | 69 | ribonucleoprotein complex | 94.2% |
2 | 43 | chloroplast; photosynthesis | 95.34%; 62.79% | |
3 | 25 | mitochondrial part | 16% | |
4 | 38 | plastid; structural constituent of ribosome; peptydil-prolil cis-trans isoemerase activity | 68.42%; 23.68%; 10.52% | |
5 | 13 | None | None | |
6 | 25 | structural constituent of ribosome | 84% | |
7 | 27 | chloroplast; photosynthesis | 74.04%; 14.81% | |
8 | 14 | None | None | |
9 | 19 | nuclear part | 26.31% | |
10 | 13 | plastid; photosynthesis | 84.61%; 30.76% | |
11 | 8 | ER | 87.5% | |
12 | 13 | chloroplast; plastid | 76.92%; 61.53% | |
13 | 8 | glycoside biosynthetic process | 50% | |
14 | 14 | None | None | |
15 | 8 | None | None | |
16 | 24 | chloroplast; plastid | 66.66%; 41.66% | |
17 | 11 | chloroplast | 72.72% | |
18 | 26 | chloroplast; ribosome | 65.38%; 26.92% | |
19 | 19 | structural constituent of ribosome | 89.47% | |
20 | 9 | None | None | |
21 | 22 | chloroplast; oxidoreductase activity; structural constituent of ribosome | 45.45%; 40.9%; 31.81% | |
22 | 6 | None | None | |
23 | 7 | None | None | |
24 | 11 | None | None | |
25 | 5 | structural constituent of cell wall; cellulose and pectin-containing cell wall organization and biogenesis | 100%; 100% | |
26 | 5 | None | None | |
27 | 8 | None | None | |
28 | 10 | structural constituent of ribosome | 80% | |
29 | 15 | ribosome biogenesis and assembly | 33.33% | |
30 | 5 | None | None | |
31 | 10 | None | None | |
32 | 4 | response to auxin stimulus | 100% | |
33 | 4 | None | None | |
34 | 4 | nucleosome assembly | 100% | |
35 | 4 | None | None |