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Table 5 GO Enrichment of clusters found in the 0.4 co-expression network

From: Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

Network tscore threshold Cluster ID Cluster Size Enriched GO Terms Percent of Genes with Enriched GO Terms
0.4 1 69 ribonucleoprotein complex 94.2%
  2 43 chloroplast; photosynthesis 95.34%; 62.79%
  3 25 mitochondrial part 16%
  4 38 plastid; structural constituent of ribosome; peptydil-prolil cis-trans isoemerase activity 68.42%; 23.68%; 10.52%
  5 13 None None
  6 25 structural constituent of ribosome 84%
  7 27 chloroplast; photosynthesis 74.04%; 14.81%
  8 14 None None
  9 19 nuclear part 26.31%
  10 13 plastid; photosynthesis 84.61%; 30.76%
  11 8 ER 87.5%
  12 13 chloroplast; plastid 76.92%; 61.53%
  13 8 glycoside biosynthetic process 50%
  14 14 None None
  15 8 None None
  16 24 chloroplast; plastid 66.66%; 41.66%
  17 11 chloroplast 72.72%
  18 26 chloroplast; ribosome 65.38%; 26.92%
  19 19 structural constituent of ribosome 89.47%
  20 9 None None
  21 22 chloroplast; oxidoreductase activity; structural constituent of ribosome 45.45%; 40.9%; 31.81%
  22 6 None None
  23 7 None None
  24 11 None None
  25 5 structural constituent of cell wall; cellulose and pectin-containing cell wall organization and biogenesis 100%; 100%
  26 5 None None
  27 8 None None
  28 10 structural constituent of ribosome 80%
  29 15 ribosome biogenesis and assembly 33.33%
  30 5 None None
  31 10 None None
  32 4 response to auxin stimulus 100%
  33 4 None None
  34 4 nucleosome assembly 100%
  35 4 None None
  1. Close or overlapping GO terms were not listed in the table. A complete list is available in Additional data file 7. Corrected p-values for all GO enrichments are lower than 0.002. Comment applies to both Table 4 and Table 5.