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Table 1 Comparison of DBSolve Optimum functionality with that of DBSolve5, Copasi, Teranode, Cell Designer and SBML Pet

From: DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results

  DBSolve Optimum DBSolve5 Copasi TERANODE suite Cell Designer SBML PET
Create model + + + + + -
SBML support + - + + + +
ODE Solver + + + + + +
Stochastic ODE Solver - - + - - -
Steady state analysis + + + - - -
Explicit Solver + + - - - -
Implicit Solver + + + - - -
Fitting ODE + + + + + +
Fitting Explicit + + - - - -
Fitting Implicit + + + - - -
Bifurcation analysis + + - - - -
Plotting of calculation results 2D/3D +/+ +/- +/- +/- +/- - /-
Animation of calculation results + - + - - -
Commercial - - - + - -
Multiplatform - - + + + +
  1. A list of tools implemented (marked by "+") or not implemented (marked by "-") in corresponding software package is presented.