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Table 2 List of experiments

From: Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis

ID

Time points (min)

Replicates

ccdB overexpression, o-phenanthroline chelator, recA knockout, different E. coli strains

cc dB-K12

0, 30, 60, 90, 120

1

cc dB-MG1063

0, 30, 60, 90, 120

2

cc dB-W1872

0, 30, 60, 90

1

cc dB-chelator W1872*

0, 30, 60, 120

1

cc dB-chelator MG1063*

0, 30, 60, 120

1

cc dB-BW25113*

0, 30, 60, 120, 180

1

cc dB-MG1655

0, 30, 60, 90

2

cc dB-BW25113recA*

0, 30, 60, 120, 180

1

lacZ up-regulation after induction, different E. coli strains

lacZ-K12

0, 30, 60, 90, 120

1

lacZ-MG1063

0, 30, 60, 90

2

lacZ-W1863

0, 30, 60, 90

1

lacZ-MG1655

0, 30, 60, 90

1

norfloxacin, recA knockout, different E. coli strains

MG1063-uninduced*

0, 30, 60, 120

1

nor oxacin-MG1063*

0, 30, 60, 120

1

BW25113-uninduced*

0, 30, 60, 120, 180

1

norfloxacin-BW25113*

0, 30, 60, 120, 180

1

BW25113recA-uninduced*

0, 30, 60, 120, 180

1

norfloxacin-BW25113recA*

0, 30, 60, 120, 180

1

MG1655-uninduced

0, 30, 60, 90

1

  1. Microarray data from M3Dused for the inference of gene regulatory networks. Details on the experimental conditions can be obtained from M3D. Please note that for each experiment, only time-points 0, 30, 60 and 90 minutes were used. If time-point 90 minutes was missing, it was interpolated using splines (experiments marked with*).
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BMC Systems Biology

ISSN: 1752-0509

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