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Table 2 List of experiments

From: Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis

ID Time points (min) Replicates
ccdB overexpression, o-phenanthroline chelator, recA knockout, different E. coli strains
cc dB-K12 0, 30, 60, 90, 120 1
cc dB-MG1063 0, 30, 60, 90, 120 2
cc dB-W1872 0, 30, 60, 90 1
cc dB-chelator W1872* 0, 30, 60, 120 1
cc dB-chelator MG1063* 0, 30, 60, 120 1
cc dB-BW25113* 0, 30, 60, 120, 180 1
cc dB-MG1655 0, 30, 60, 90 2
cc dB-BW25113recA* 0, 30, 60, 120, 180 1
lacZ up-regulation after induction, different E. coli strains
lacZ-K12 0, 30, 60, 90, 120 1
lacZ-MG1063 0, 30, 60, 90 2
lacZ-W1863 0, 30, 60, 90 1
lacZ-MG1655 0, 30, 60, 90 1
norfloxacin, recA knockout, different E. coli strains
MG1063-uninduced* 0, 30, 60, 120 1
nor oxacin-MG1063* 0, 30, 60, 120 1
BW25113-uninduced* 0, 30, 60, 120, 180 1
norfloxacin-BW25113* 0, 30, 60, 120, 180 1
BW25113recA-uninduced* 0, 30, 60, 120, 180 1
norfloxacin-BW25113recA* 0, 30, 60, 120, 180 1
MG1655-uninduced 0, 30, 60, 90 1
  1. Microarray data from M3Dused for the inference of gene regulatory networks. Details on the experimental conditions can be obtained from M3D. Please note that for each experiment, only time-points 0, 30, 60 and 90 minutes were used. If time-point 90 minutes was missing, it was interpolated using splines (experiments marked with*).