Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche

BMC Systems Biology

Table 3 Simulated configurations of models B and B' compared to those observed in real roots of Arabidopsis thaliana

Cell type	PLT	Auxin	ARF	Aux/IAA	SHR	SCR	JKD	MGP	WOX5	CLEX
QC	1(1)	1(1)	1(1)	0(0)	1(1)	1(1)	1(1)	0(0)	1(1)	0(0)
Vascular Initials	1(1)	1(1)	1(1)	0(0)	1(1)	0(0)	0(0)	0(0)	0(0)	1(1 or 0)
CEI	1(1)	1(1)	1(1)	0(0)	1(1)	1(1)	1(1)	1(1)	0(0)	1(1)
CepI	1(1)	1(1)	1(1)	0(0)	0(0)	0(0)	0(0)	0(0)	0(0)	0(0)

A value of 1 means that the gene is "ON", whereas a value of 0 means that it is "OFF". Simulated gene states for each cell type are shown first and observed gene states are in parenthesis. It is important to note that the extra attractors of the simulated configurations in these models are the same as the one corresponding to the vascular initials but with CLEX OFF.

ISSN: 1752-0509