The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression

BMC Systems Biology

Table 4 Number of proteins predicted by compartment-specific predictor.

For each compartment-specific predictor, the known (experimentally determined) compartment is shown for all "positive" predictions (total number of positive predictions are shown in parenthesis). The last column shows the number of predictions that knowingly belong to the compartment identified in the second column. For example, the test outcomes of the predictor trained to discriminate nucleolar proteins from others are shown in the first section. Of 578 positives, 373 were correctly classified, 78 were classified as "nuclear speckle" proteins, etc. Note that in the case of multi-class proteins, the alternative compartment is not necessarily incorrect.

ISSN: 1752-0509