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Table 1 Correlations between metabolites and transcript levels in developing seedlings.

From: Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis

Metabolite

Number of Relationships*

Direction of Correlations†

Glucose

1

N

Sucrose

129

P

Fructose

1

P

Rhamnose

1

N

Malate

3

N (1), P (2)

Citrate

7

N (6), P (1)

Fumarate

3

N (2), P (1)

Formate

1

N

Lactate

21

N

Glutamine

7

N

Alanine

4

N (1), P (3)

Valine

3

N

Threonine

5

N

Trigonelline

16

N (15), P (1)

Choline

1

N

unkD8.0

6

N (2), P (4)

unkM7.9

4

N

unkS7.36

3

N

unkM5.18

2

N (1), P (1)

unkM1.85

19

N (18), P (1)

  1. *Number of significant Pearson correlations between the metabolite and genes above p = 9.8 × 10-5 (FDR = 5%) determined over the 9 sampling periods, day 0 to day 8. †The direction of the linear regression, either positive (P) or negative (N) and the number in each direction in parentheses.
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BMC Systems Biology

ISSN: 1752-0509

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