Table 2 Data sets analyzed for verification and expansion of the cell proliferation literature model
From: Construction of a computable cell proliferation network focused on non-diseased lung cells
Data Set | EIF4G1 | RhoA | CTNNB1 | NR3C1 |
|---|---|---|---|---|
Data Set ID | GSE11011 | GSE5913 | PMID15186480 | E-MEXP-861 |
PubMed ID | 18426977 | 17213802 | 15186480 | 17901120 |
Perturbation | EIF4G1 siRNA | RhoA Q63L | constitutive beta-catenin-LEF-1 | glucocorticoid receptor null |
Control Samples | 3 control | 8 control | 3 control | 3 control |
Experimental Samples | 3 siRNA | 7 transfected | 3 transgenic | 3 null |
Microarray Platform | Affymetrix Human Genome U133A 2.0 | Affymetrix Mouse Genome U74A v2 | Affymetrix Mouse Genome 430A | GE Healthcare CodeLink Mouse Whole Genome Bioarray |
Tissue | MCF10A cells | NIH3T3 cells | day 18.5 embryonic lung | day 18.5 embryonic lung |
Species | human | mouse | mouse | mouse |
# State changes | 367 | 1153 | 645 | 144 |