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Table 4 Ratio of protein abundance in the model without repression to the model under consideration

From: Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration

Model

  

11 plasmids

 
 

kA[s-1]

Atot

[nM]

Atot(no repression) [nM]

Ratio

11

7.9

1576

91741

58

uu

11.5

1649

133548

81

u0

14

1649

162582

99

0u

43

1627

499355

307

00

735

1649

133548

5308

  1. Ratios for the system with 11 plasmids; kA, kB - protein synthesis rate for KorA and KorB, respectively; Atot, Btot - total monomer abundance of KorA and KorB, respectively; Ratio A, Ratio B - a ratio of protein abundance between the model with no repression and the system under consideration for KorA and KorB, respectively; models: the first and second signs stand for expression from complexes when KorA or KorB are bound to the DNA, respectively, 1 - no repression, u - partial repression, 0 - total repression.