Table 1 62 mouse neural stem cell related microarray data sets included in the analysis.

GSE12499

NSCs

10

Oct4-Induced Pluripotency in Adult NSCs

GSE10806

Adult NSCs

11

Pluripotent SCs induced from adult NSCs by

reprogramming with two factors

GSE13379

CNSs

107

Application of a translational profiling approach for the

comparative analysis of CNS cell types

GSE11862

Neurogenesis

6

Early Gene expression changes after axonal injury

GSE10796

NPCs

4

Identification of genes that restrict astrocyte differentiation

of midgestational neural precursor cells

GSE11859

NPCs

27

Acquisition of granule neuron precursor identity and

Hedgehog-induced medulloblastoma in mice

GSE8034

Radial glias

17

Prospective isolation of functionally distinct radial glial

subtypes - lineage and transcriptome analysis

GSE8091

eNSCs

16

Embryonic brain development

GSE10577

Glia

12

endothelin signaling from photoreceptors to glia

GSE9812

NPCs

22

Molecular heterogeneity of developing retinal ganglion and

amacrine cells

GSE9763

NPCs

20

Transformed glial progenitor cells

GSE8555

eNSCs

8

D-3-phosphoglycerate dehydrogenase deficiency effect on

the embryonic head

GSE5817

eNSCs

21

understanding the process of cortical development

GDS2209

CNS

6

Spinal cord and dorsal root ganglion

GDS1017

CNS

15

Hypoxic-ischemic injury response to erythropoietin

pretreatment

GSE9811

NPCs

42

Individual retinal progenitor cells display extensive

heterogeneity of gene expression

GSE6675

Astroglia

8

Astroglial gene expression program elicited by

fibroblast growth factor-2 mande-affy-mouse-307080

GSE5425

CNS

6

Spinal cord and dorsal root ganglion

GSE5011

MSCs

10

molecular changes the MSC acquire through in-vitro

passages determine their therapeutic potential to EAE

GSE1999

Neurogenesis

15

Hypoxic-ischemic injury response to erythropoietin

pretreatment

GDS2937

NPCs

6

Olfactory marker protein deficiency effect on the

olfactory epithelium

GDS2846

Neuron

6

MicroRNA miR-124 expression effect on neuronal cell line

GDS2803

Neurogenesis

4

Fluoxetine effect on the hippocampus

GDS2391

Neurogenesis

6

PGC-1alpha transcriptional coactivator null mutation

GDS2096

Cancer cells

8

Glucocorticoid receptor activation effect on breast cancer

cells

GDS1793

Neuron

8

Homeodomain interacting protein kinase 2 dominant-negative form effect on trigeminal ganglion

GDS1693

CNS

39

Transcription factor Nrl deficiency effect on photoreceptor

development

GDS1635

Neuron

20

Nodose and dorsal root ganglia comparison

GDS1084

eNSCs

8

Homeobox Dlx1/2 mutations effect on embryonic

telencephalon

GSE13386

Neuron

24

Comparative analysis of Drd1+ Medium Spiny Neurons,

Drd2+ Medium Spiny Neurons, cocaine treatment

GSE13385

Neuron

9

GSE13384

Neuron

6

GSE13387

Neuron

24

GSE13394

CNS

63

A translational profiling approach for the molecular

characterization of CNS cell types

characterization of CNS cell types

GSE13379

CNS

107

Application of a translational profiling approach for the

comparative analysis of CNS cell

GSE11258

Neuron

24

Npas4-regulated genes in mouse hippocampal neurons

GSE10796

NPCs

4

Identification of genes that restrict astrocyte differentiation

of midgestational neural precursor cells

GSE11859

NPCs

27

Acquisition of granule neuron precursor identity and

Hedgehog-induced medulloblastoma in mice

GSE8034

Radial glia

17

Prospective isolation of functionally distinct radial glial

subtypes

GSE11207

Neuron

6

Dorsal root ganglion

GSE11141

NSCs

21

Effects of NgR overexpression on the developing and

mature forebrain

GSE10360

neuron

2

Role of Endothelin in SCG axon pathfinding

GSE9566

eNSCs

3

PDGF-B induces a homogeneous class of

oligodendrogliomas from embryonic neural progenitors

GSE9803

Neurogenesis

9

Striatal gene expression data from 12 weeks-old R6/2 mice

and control mice

GSE9804

Neurogenesis

9

GSE9330

Neurogenesis

8

Transcription factor Ctip2 deficiency effect on brain striata

GSE6540

Neurogenesis

12

Expression data from olfactory epithelium of Lip-C-treated

mice compared to Lip-O-treated control mice

GSE9443

CNS

131

Sleep deprivation and the brain

GSE6485

Neurogenesis

6

Expression data from olfactory epithelium of Harlequin

mutant mice compared to littermate controls

GSE9760

ESC

12

Embryonic stem cells with expanded CAG repeats

GSE6476

Neuron

4

Fluoxetine effect on the hippocampus

GSE8311

Neurogenesis

5

Dlx homeodomain transcription factor mutants

GSE8024

NSC, ESC

8

Murine ES cells, neural precursor cells and embryonic

fibroblasts

GSE4927

Neurogenesis

6

Olfactory marker protein deficiency effect on the olfactory

epithelium

GSE6275

CNS

36

neuronal dysfunction associated with the ataxic and epileptic

phenotypes

GSE4774

Development

15

To determine how Dlx homeobox genes function

GSE4752

CNS

6

target genes regulated by Egr transcriptional regulators

GSE4051

Diff.

8

Photoreceptor-specific nuclear receptor NR2E3 ectopic

expression effect on NRL null retinas

GSE4041

CNS

6

abnormal expression patterns in NR3B-null mice

GSE2873

Diff.

4

Skeletal muscle synaptic region

GSE2869

Neurogenesis

8

Homeodomain interacting protein kinase 2 dominant-

negative form effect on trigeminal ganglion

GSE2161

eNSCs

8

Homeobox Dlx1/2 mutations effect on embryonic

telencephalon