Skip to main content

Table 2 Model Parameters*

From: Complex receptor-ligand dynamics control the response of the VEGF system to protease injury

Symbol

Value

Meaning

R1(t = 0)

65,000 #/cell

# of VEGFR1 per cell at time zero

R2(t = 0)

12,000 #/cell

# of VEGFR2 per cell at time zero

N(t = 0)

10,000 #/cell

# of Neuropilin-1 per cell at time zero

E(t = 0)

1,000,000 #/cell

# of ECM sites per cell which can bind

VEGF at time zero

k f V R 1 ; k r V R 1

3 × 107 M-1 s-1;

1 × 10-3 s-1

Association/dissociation rate constant for

VEGF binding to VEGFR1

k f V R 2 ; k r V R 2

1 × 107 M-1 s-1;

1 × 10-3 s-1

Association/dissociation rate constant for

VEGF binding to VEGFR2

k f V E ; k r V E

4.2 × 105 M-1 s-1;

1 × 10-2 s-1

Association/dissociation rate constant for

VEGF binding to ECM (based on HS values from literature)

k f V N ; k r V N

3.125 × 106 M-1 s-1;

1 × 10-3 s-1

Association/dissociation rate constant for

VEGF binding to NP-1

k f F R 1 ; k r F R 1

3 × 107 M-1 s-1;

1 × 10-3 s-1

Association/dissociation rate constant for

VEGFf binding to VEGFR1(modeled the same as VEGF)

k c C 2 N ; k u c C 2 N

3.1 × 1013 (mol/cm2)-1 s-1;

1 × 10-3 s-1

Coupling/uncoupling rate constant for

VEGF-VEGFR2 with NP-1

k c R 1 N ; k u c R 1 N

1 × 1014 (mol/cm2)-1 s-1;

1 × 10-2 s-1

Coupling/uncoupling rate constant for

VEGFR1 with NP-1

k c C N R 2 ; k u c C N R 2

1 × 1014 (mol/cm2)-1 s-1;

1 × 10-3 s-1

Coupling/uncoupling rate constant for

VEGF-NP-1with VEGFR2

k f F X ; k r F X

k f F R 1 ; k r F R 1

Association/dissociation rate constant for

VEGFf binding to VEGFR1-NP-1

k c D N ; k u c D N

k c R 1 N ; k u c R 1 N

Coupling/uncoupling rate constant for

VEGFf-VEGFR1 with NP-1

k int

2.8 × 10-4 s-1

Internalization rate for unbound receptors

k int C

2.8 × 10-4 s-1

Internalization rate for VEGF-bound receptors

k int F

2.8 × 10-4 s-1

Internalization rate for VEGFf-bound receptors

S I

k int I 0

Synthesis rate for species I where I0 is the initial concentration of I

  1. *Values are from literature when possible [20]. VEGFf assumed to interact in similar manner to VEGF when applicable.