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Table 6 Summary information of association modules for microRNA expressions

From: Deciphering causal and statistical relations of molecular aberrations and gene expressions in NCI-60 cell lines

index driver type drivers reg sign N
1 inter CNV seg 69 SPOP,NME2,POLG2 - 38
2 inter CNV seg 55 NR2C1,NFYB - 29
3 inter CNV seg 51 RICS + 23
4 inter CNV seg 18 ZIC1,MITF - 19
5 inter CNV seg 15 DNMT1,MBD3 + 15
6 inter CNV seg 30 SRF + 13
7 inter CNV seg 66 MAP2K4 - 13
8 inter CNV seg 68 BRCA1 - 12
9 inter CNV seg 13 NFE2L2 - 10
10 mutation TP53 NA + 17
11 mutation KRAS NA - 15
12 mutation APC NA + 10
13 mutation STK11 NA - 10
14 methylation BCR NA - 12
15 TF TF group 1 NA + 28
16 TF MBD1 NA + 19
17 TF TFE3 NA + 18
18 TF BR2F1 NA + 17
19 TF GRLF1 NA + 15
20 TF HIF1A NA + 14
21 TF E4F1 NA + 12
22 TF TFDP1 NA + 12
23 TF FOXM1 NA + 11
24 TF ATF2 NA + 10
25 intra CNV chr14p NA + 14
  1. Annotations follow Table 1.