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Table 2 Estimated size and power (each condition has three replicates).

From: Statistical methods on detecting differentially expressed genes for RNA-seq data

Lambda1 Lambda1 LRT Cond Wald Wald-Log VST Fisher
5 5 0.0012 0.0009 0.0009 0.0027 0.0012 0.0009
  7 0.0102 0.0062 0.0077 0.0175 0.0103 0.0062
  9 0.0786 0.0542 0.0652 0.1150 0.0786 0.0542
  11 0.2517 0.2008 0.2265 0.3160 0.2517 0.2008
  13 0.5204 0.4581 0.4940 0.5872 0.5204 0.4581
10 10 0.0008 0.0002 0.0006 0.0016 0.0008 0.0002
  12 0.0045 0.0029 0.0042 0.0065 0.0045 0.0029
  14 0.0316 0.0229 0.0279 0.0389 0.0316 0.0229
  16 0.1100 0.0882 0.1019 0.1272 0.1100 0.0882
  18 0.2602 0.2198 0.2454 0.2883 0.2603 0.2198
  20 0.4670 0.4210 0.4515 0.5005 0.4672 0.4210
15 15 0.0007 0.0003 0.0007 0.0007 0.0007 0.0003
  17 0.0034 0.0026 0.0031 0.0049 0.0034 0.0026
  19 0.0181 0.0144 0.0172 0.0221 0.0182 0.0144
  21 0.0612 0.0505 0.0583 0.0712 0.0618 0.0505
  23 0.1442 0.1251 0.1395 0.1648 0.1460 0.1251
  25 0.2850 0.2564 0.2759 0.3125 0.2869 0.2564
30 30 0.0014 0.0010 0.0013 0.0016 0.0014 0.0010
  34 0.0074 0.0057 0.0071 0.0082 0.0074 0.0057
  38 0.0520 0.0457 0.0505 0.0570 0.0520 0.0457
  42 0.2073 0.1846 0.2034 0.2210 0.2073 0.1846
  46 0.4543 0.4270 0.4486 0.4701 0.4543 0.4270
  1. Estimated size and power from each method for detecting the difference of means between two Poisson distributions. There are three replicates for each condition. The Poisson means for the first condition are 5, 10, 15, or 30. The second Poisson means are the same as (for size) or larger than (for power) the first ones. The nominal size (significance level) is 10-3 and 10,000 runs are used for each setting.
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