Table 3 Numbers of DEGs of low expression obtained by various methods.
From: Statistical methods on detecting differentially expressed genes for RNA-seq data
Cutoff | LRT | Cond | Wald | Wald-Log | VST | Fisher |
|---|---|---|---|---|---|---|
1e-3 | 498 | 434 | 462 | 581 | 498 | 434 |
1e-4 | 303 | 258 | 270 | 403 | 305 | 260 |
1e-5 | 195 | 166 | 166 | 275 | 201 | 166 |
1e-6 | 113 | 86 | 84 | 209 | 119 | 86 |