Table 3 GraphAlignment and Græmlin performance on empirical bio-molecular networks
From: GraphAlignment: Bayesian pairwise alignment of biological networks
Comparison | Escherichia coli vs. Salmonella enterica | Escherichia coli vs. Bacillus subtilis | ||||
|---|---|---|---|---|---|---|
Algorithm | GraphAlignment | Græmlin | Blast BBH | GraphAlignment | Græmlin | Blast BBH |
NA | 624 | 687 | 662 | 585 | 459 | 401 |
NC | 539 | 492 (562) | 557 | 259 | 237 (296) | 274 |
NO | 543 | 543 | 543 | 284 | 284 | 284 |
NC / NA [%] | 86.4 | 71.6 (81.8) | 84.1 | 44.3 | 51.6 (64.5) | 68.3 |
NC / NO [%] | 99.3 | 90.6 (104) | 103 | 91.2 | 83.5 (104) | 96.5 |
Edge / vertex score | 1453 / 4789 | - | - | 1979 / 2550 | - | - |