Skip to main content

Table 5 Table showing data overlap for same chosen pathways in difference source databases.

From: IntPath--an integrated pathway gene relationship database for model organisms and important pathogens

M. musculus TCA cycle pathway KEGG vs WikiPathways KEGG vs MouseCyc MouseCyc vs WikiPathways
Gene Count 31 vs 30 31 vs 13 13 vs 30
  Overlap 24 13 11
  Jaccard Coefficient 0.65 0.42 0.34
Gene Pair Count 100 vs 30 100 vs 24 24 vs 30
  Overlap 10 9 7
  Jaccard Coefficient 0.083 0.078 0.149
H. sapiens Fatty Acid Biosynthesis KEGG vs WikiPathways KEGG vs HumanCyc HumanCyc vs WikiPathways
Gene Count 6 vs 22 6 vs 2 2 vs 22
  Overlap 3 2 1
  Jaccard Coefficient 0.12 0.33 0.04
Gene Pair Count 12 vs 29 12 vs 2 2 vs 29
  Overlap 1 1 0
  Jaccard Coefficient 0.025 0.077 0.0
M . t uberculosis H37Rv TCA cycle pathway KEGG vs WikiPathways KEGG vs MTBRvCyc MTBRvCyc vs WikiPathways
Gene Count 35 vs 34 35 vs 10 10 vs 34
  Overlap 34 10 10
  Jaccard Coefficient 0.97 0.29 0.29
Gene Pair Count 107 vs 37 107 vs 19 19 vs 37
  Overlap 3 9 5
  Jaccard Coefficient 0.021 0.077 0.098
  1. This table shows the calculation of gene/gene pair differences and overlap between the different source databases for the same chosen pathways.