Table 8 Summary of number of pathways, average number of genes per pathway and average number of gene pairs per pathway before and after integration.
H. sapiens | No. of Pathways BEFORE integration | Average No. of genes/pathway | Average No. of gene pairs/pathway |
|---|---|---|---|
WikiPathways | 135 pathways | 46.3 | 166.2 |
HumanCyc | 290 pathways | 7.2 | 33.0 |
KEGG | 237 pathways | 72.4 | 171.3 |
H . sapiens | No. of unique Pathways AFTER integration | Average No. of genes/pathway | Average No. of gene pairs/pathway |
WikiPathways | 100 pathways | 42.7 | 157.4 |
HumanCyc | 225 pathways | 7.2 | 31.6 |
KEGG | 201 pathways | 72.6 | 165.3 |
Integrated Pathways | 57 pathways | 59.5 | 263.6 |
M . musculus | No. of Pathways BEFORE integration | Average No. of genes/pathway | Average No. of gene pairs/pathway |
WikiPathways | 140 pathways | 57.8 | 209.1 |
MouseCyc | 323 pathways | 8.0 | 61.4 |
KEGG | 218 pathways | 74.6 | 194.8 |
M . musculus | No. of unique Pathways AFTER integration | Average No. of genes/pathway | Average No. of gene pairs/pathway |
WikiPathways | 97 pathways | 56.8 | 242.8 |
MouseCyc | 204 pathways | 7.4 | 43.0 |
KEGG | 172 pathways | 77.9 | 187.3 |
Integrated Pathways | 85 pathways | 52.6 | 260.9 |
S . cerevisiae | No. of Pathways BEFORE integration | Average No. of genes/pathway | Average No. of gene pairs/pathway |
WikiPathways | 125 pathways | 11.8 | 0.5 |
YeastCyc | 184 pathways | 6.5 | 13.4 |
KEGG | 98 pathways | 35.2 | 34.7 |
S . cerevisiae | No. of unique Pathways AFTER integration | Average No. of genes/pathway | Average No. of gene pairs/pathway |
WikiPathways | 45 pathways | 15.1 | 0.2 |
YeastCyc | 85 pathways | 5.8 | 11.6 |
KEGG | 80 pathways | 38.0 | 35.0 |
Integrated Pathways | 76 pathways | 14.1 | 25.2 |
M. tuberculosis H37Rv | No. of Pathways BEFORE integration | Average No. of genes/pathway | Average No. of gene pairs/pathway |
WikiPathways | 8 pathways | 22.3 | 7.8 |
MTBRvCyc | 234 pathways | 5.7 | 18.9 |
KEGG | 110 pathways | 32.5 | 47.5 |
M . tuberculosis H37Rv | No. of unique Pathways AFTER integration | Average No. of genes/pathway | Average No. of gene pairs/pathway |
WikiPathways | 0 pathways | Â | Â |
MTBRvCyc | 171 pathways | 5.9 | 21.0 |
KEGG | 94 pathways | 35.4 | 51.7 |
Integrated Pathways | 35 pathways | 12.3 | 25.4 |