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Table 3 Comparison of methods on complete DREAM4 data

From: Joint estimation of causal effects from observational and intervention gene expression data

Criterion Dataset Petri MCMC- Pinna IDA IDA
   Nets Mallows   (opt) (pes)
  1 0.972 0.447 0.833 0.448 0.413
  2 0.841 0.647 0.584 0.610 0.641
AUROC 3 0.900 0.717 0.816 0.638 0.638
  4 0.954 0.867 0.899 0.554 0.483
  5 0.928 0.814 0.700 0.599 0.534
  1 0.916 0.183 0.506 0.142 0.133
  2 0.547 0.289 0.331 0.243 0.284
AUPRC 3 0.968 0.340 0.416 0.242 0.242
  4 0.852 0.633 0.664 0.162 0.158
  5 0.761 0.308 0.278 0.146 0.156
DREAM score overall 7.127 2.579 3.563 0.735 0.723
  1. Area under the ROC curve (AUROC), area under the precision-recall curve (AUPRC), and DREAM score for each of the five DREAM4 datasets for the Petri Nets [17], MCMC-Mallows, Pinna et al., and IDA (optimistic and pessimistic) methods. Results for the Petri Nets method [17] and evaluation scripts for the overall DREAM score were obtained from the DREAM4 evaluation page, located at http://wiki.c2b2.columbia.edu/dream/results/DREAM4.