Table 2 Comparison of the functional annotation results from different methods for Melanoma
From: Multilevel omic data integration in cancer cell lines: advanced annotation and emergent properties
| Â | Â | Molecules | ||||||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Joint Analysis FA (HC) | Â | Â | Separate Analysis FA (HC) | Â | ||
| Â | Â | mRNA | mRNA | mRNA | Â | mRNA | mRNA | mRNA |
| Â | Â | Â | &Prot | &Prot | Â | Â | +Prot | +Prot |
Biological terms | Â | Â | Â | &miRNA | Â | Â | Â | +miRNA |
GO:0048066 pigmentation during development | Â | X (X) | X (X) | X (X) | Â | X (X) | X (X) | X (X) |
GO:0043473 pigmentation | Â | X (X) | X (X) | X (X) | Â | X (X) | X (X) | X (X) |
GO:0030318 melanocyte differentiation | Â | X (X) | X (X) | X (X) | Â | X (X) | X (X) | X (X) |
GO:0050931 pigment cell differentiation | Â | X (X) | X (X) | X (X) | Â | X (X) | X (X) | X (X) |
GO:0042438 melanin biosynthetic process | Â | X (X) | X (X) | X (X) | Â | - (X) | - (-) | - (-) |
GO:0006582 melanin metabolic process | Â | - (-) | X (X) | X (-) | Â | - (-) | - (-) | - (-) |
GO:0046148 pigment biosynthetic process | Â | - (-) | - (X) | - (-) | Â | - (-) | - (-) | - (-) |
hsa04916:Melanogenesis | Â | - (-) | X (-) | X (-) | Â | - (-) | - (-) | - (-) |
BP00193:Developmental processes | Â | - (-) | X (-) | - (-) | Â | - (-) | X (X) | - (-) |
GO:0010033 response to organic substance | Â | - (-) | X (-) | - (-) | Â | - (-) | - (-) | - (-) |
GO:0019233 sensory perception of pain | Â | - (-) | X (-) | - (-) | Â | - (-) | - (-) | - (-) |
GO:0030029 actin filament-based process | Â | - (X) | - (X) | - (-) | Â | - (-) | - (-) | - (-) |
GO:0030036 actin cytoskeleton organization | Â | - (X) | - (X) | - (-) | Â | - (-) | - (-) | - (-) |
GO:0001501 skeletal system development | Â | - (-) | - (-) | - (-) | Â | - (-) | X (X) | - (-) |