Table 5 Genomes used to construct ancestral core metabolic networks
From: Inferring ancient metabolism using ancestral core metabolic models of enterobacteria
Strain | ORFs | Genome number |
|---|---|---|
Escherichia coli K-12 MG1655 | 4,141 | 1 |
Escherichia coli EDL933 | 5,196 | 2 |
Escherichia coli 53638 | 5,172 | 3 |
Escherichia coli CFTO73 | 4,889 | 4 |
Escherichia coli E2348/69 | 4,652 | 5 |
Escherichia coli EC4115 | 5,467 | 6 |
Escherichia coli UTI89 | 4,944 | 7 |
Escherichia coli E24377A | 4,953 | 8 |
Escherichia coli Sakai | 5,253 | 9 |
Escherichia coli SE11 | 4,973 | 10 |
Escherichia coli APEC O1 | 5,045 | 11 |
Escherichia coli SMS-3-5 | 4,906 | 12 |
Escherichia coli 536 | 4,599 | 13 |
Escherichia coli HS | 4,393 | 14 |
Escherichia coli ATCC 8739 | 4,236 | 15 |
Escherichia coli K-12Â W3110 | 4,171 | 16 |
Shigella boydii 227 | 4,578 | 17 |
Shigella boydii BS512 | 4,578 | 18 |
Shigella dysenteriae 197 | 4,460 | 19 |
Shigella flexneri 2457Â T | 4,527 | 20 |
Shigella flexneri 301 | 4,460 | 21 |
Shigella flexneri 8401 | 4,135 | 22 |
Shigella sonnei 046 | 4,456 | 23 |
Salmonella Agona SL483 | 4,613 | 24 |
Salmonella Arizonae CDC 346-86 | 4.505 | 25 |
Salmonella Choleraesuis SC-B67 | 4,663 | 26 |
Salmonella Dublin CT_02021853 | 4,619 | 27 |
Salmonella Enteritidis P125109 | 4,204 | 28 |
Salmonella Gallinarum 287/91 | 3,963 | 29 |
Salmonella Heidelberg SL476 | 4,779 | 30 |
Salmonella Newport SL254 | 4,807 | 31 |
Salmonella Paratyphi A AKU_12601 | 4,286 | 32 |
Salmonella Paratyphi A ATCC 9150 | 4,095 | 33 |
Salmonella Paratyphi B SPB7 | 5,590 | 34 |
Salmonella Schwarzengrund CVM19633 | 4,628 | 35 |
Salmonella Typhi CT18 | 4,696 | 36 |
Salmonella Typhi Ty2 | 4,323 | 37 |
Salmonella Typhimurium 14028S | 5,474 | 38 |
Salmonella Typhimurium LT2 | 4,525 | 39 |
Leclercia adecarboxylata ATCC 23216 | 4,732 | 40 |
Klebsiella pneumoniae MGH 78578 | 5,185 | 41 |
Yokenella regensburgei ATCC 49455 | 4,657 | 42 |
Cedecea davisae ATCC 33431 | 4,590 | 43 |
Erwinia amylovora ATCC 49946 | 3,616 | 44 |
Erwinia tasmaniensis Et1/99 | 3,623 | 45 |
Pantoea stewartii DC283 | 4,964 | 46 |
Serratia marcescens subsp. marcescens ATCC 13880 | 4,892 | 47 |
Ewingella americana ATCC 33852 | 4,444 | 48 |
Dickeya dadantii 3937 | 4,494 | 49 |
Dickeya sp.i Ech586 | 4,215 | 50 |
Dickeya sp. 703 | 3,970 | 51 |
Dickeya sp Ech1591 | 4,162 | 52 |
Pectobacterium atrosepticum SCRI1043 | 4,466 | 53 |
Pectobacterium brasiliensis 1692 | 5,127 | 54 |
Pectobacterium carotovorum PC1 | 4,245 | 55 |
Pectobacterium carotovorum WPP14 | 4,818 | 56 |
Pectobacterium wasabiae WPP163 | 4,507 | 57 |
Yersinia enterocolitica 8081 | 4,054 | 58 |
Yersinia pestis 91001 | 4,190 | 59 |
Yersinia pestis Angola | 4,044 | 60 |
Yersinia pestis Antiqua | 4,357 | 61 |
Yersinia pestis CA88-4125 | 4,115 | 62 |
Yersinia pestis CO92 | 3,986 | 63 |
Yersinia pestis KIM | 4,321 | 64 |
Yersinia pestis Nepal516 | 4,085 | 65 |
Yersinia pestis Pestoides F | 4,063 | 66 |
Yersinia pseudotuberculosis IP31758 | 4,324 | 67 |
Yersinia pseudotuberculosis IP32953 | 4,058 | 68 |
Yersinia pseudotuberculosis PB1/+ 1 | 4,235 | 69 |
Yersinia pseudotuberculosis YPIII | 4,190 | 70 |
Hafnia alvei ATCC 13337 | 4,509 | 71 |
Photorhabdus luminescens TTO1 | 4,684 | 72 |