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Table 1 Data source

From: Mining breast cancer genes with a network based noise-tolerant approach

Data categories Volume of input data Original sources/tools Volume of original data Download date
PPI network 156,459 PPIs HPRD 39,240 PPIs Mar. 3, 2013
   BioGRID 129,180 PPIs Mar. 3, 2013
   homoMINT 33,502 PPIs Mar. 3, 2013
   IntAct 95,746 PPIs Mar. 3, 2013
   Human Signalling Network 59,111 PPIs Mar. 3, 2013
Gene expression data 53 GDSes GEO 57 GDSes Apr. 7, 2011
Known cancer genes 37 genes OMIM 30 genes Mar. 3, 2013
   CGC 19 genes Mar. 3, 2013
GO term (BP) 80 terms DAVID* 50 terms Mar. 3, 2013
   GOEAST* 50 terms Mar. 3, 2013
   GOstats* 50 terms Mar. 3, 2013
   Cancer-hallmark GO terms 9 terms Mar. 3, 2013
  1. * For the known breast cancer gene set, three tools were used to perform the enrichment analyses of GO terms in the BP sub-ontology: DAVID (http://david.abcc.ncifcrf.gov/home.jsp), GOEAST (http://omicslab.genetics.ac.cn/GOEAST/), and GOstats (R package in Bioconductor). DAVID and GOEAST are web tools; GOstats is an R package from Bioconductor. Cancer-hallmark GO terms were extracted from Table 1 of [37].