The outline of the Geninter analysis workflow. First, an attribute matrix containing genotypes and a matrix of survival times are given as an input to Geninter. The analysis is divided into three steps. The results (sorted list of SNP-pairs) can then be 12 annotated, for instance, using the Ensembl database and filtered to exclude markers that are in linkage disequilibrium (LD). The output contains the marker pairs, their ranks and p-values.