Table 4 Mesorhizobium-Synechocystis alignment results
From: Corbi: a new R package for biological network alignment and querying
Method | MI-GRAAL | CNetQ | CNetA | BLASTQ | BLASTA |
|---|---|---|---|---|---|
MP | 1803 | 414 | 744 | 414 | 764 |
EC | 41.37% | 2.52% | 1.55% | 0% | 0.097% |
LCCS | 1153(1158) | 31(35) | 10(9) | 1(0) | 2(1) |
GO coverage (depth ≥ 3) | |||||
MF | 5.67% | 26.52% | 33.60% | 28.16% | 38.24% |
BP | 3.97% | 23.84% | 24.56% | 24.76% | 31.67% |
CC | 1.70% | 8.52% | 8.23% | 9.22% | 9.72% |
KEGG analysis | |||||
HP | 1 | 1 | 2 | 1 | 2 |
PAC | 1.76% | 1.06% | 3.43% | 0.82% | 5.45% |