Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana

Table 1 Detailed information of each PS-specific model

Models	Gene Sets		Motif Predictions		Accuracy^♣ (%)	Genes predicted genome-wide^♠
	motif-prediction^†	model-build^‡	overall*	over-represented^§
Flower	55	83	142	6	75.8	49/ 63
Seed	59	88	183	3	69.0	134/ 165
Root	64	95	171	5	65.2	34/ 48
Shoot	62	92	142	4	60.2	51/ 95
Whole Plant	58	87	141	2	64.1	76/ 86

Notes
^† and ^‡ columns indicate the number of genes in the "motif-prediction" and "model-build" sets
^* column shows the number of motifs predicted by the three motif-discovery programs
^§ column indicates the amount of over-represented motifs per model
^♣ column shows the accuracy achieved by the corresponding SVMs
^♠ column depicts the amount of genes predicted genome-wide

ISSN: 1752-0509