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Table 3 Novel patterns of sets of motifs in promoters of A. thaliana's co-expressed genes

From: Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana

Promoter region

FLOWER

SEED

ROOT

SHOOT

PLANT

 

motif

+

-

motif

+

-

motif

+

-

motif

+

-

motif

+

-

0 to -50

Flw_3

*

*

Sd_1

*

Rt_5

*

*

Sht_3

*

*

Plt_1

*

*

 

Flw_4

*

*

Sd_2

*

*

      

Plt_2

*

 

Flw_5

*

*

Sd_3

*

         

-50 to -100

Flw_2

*

Sd_1

*

Rt_3

*

*

Sht_1

*

Plt_1

*

*

 

Flw_3

*

*

Sd_2

*

Rt_4

*

Sht_3

*

*

Plt_2

*

 

Flw_4

*

*

Sd_3

*

*

Rt_5

*

*

Sht_4

*

   
 

Flw_5

*

*

            

-100 to -150

Flw_2

*

*

Sd_2

*

*

Rt_3

*

*

Sht_1

*

Plt_1

*

*

 

Flw_3

*

Sd_3

*

*

Rt_4

*

*

Sht_3

*

*

Plt_2

*

 

Flw_4

*

Sd_1

*

Rt_5

*

*

Sht_4

*

   
 

Flw_5

*

*

            

-150 to -200

Flw_3

*

Sd_3

*

Rt_1

*

Sht_1

*

Plt_1

*

*

 

Flw_4

*

   

Rt_5

*

*

Sht_3

*

*

   
 

Flw_5

*

*

      

Sht_4

*

   
  1. Notes
  2. "+" and "-" stand for the DNA strands
  3. "*" and "∆" indicate presence and absence of the motif