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Table 5 Performance evaluation of PathNER

From: PathNER: a tool for systematic identification of biological pathway mentions in the literature

Method

Strict

Lenient

 

Recall

Precision

F1-score

Recall

Precision

F1-score

Baseline

0.32

0.49

0.38

0.43

0.66

0.54

Soft dictionary

0.44

0.51

0.47

0.63

0.72

0.67

Rules

0.51

0.86

0.64

0.58

0.97

0.72

PathNER

0.80

0.74

0.77

0.88

0.81

0.84

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BMC Systems Biology

ISSN: 1752-0509

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