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Table 5 Performance evaluation of PathNER

From: PathNER: a tool for systematic identification of biological pathway mentions in the literature

Method Strict Lenient
  Recall Precision F1-score Recall Precision F1-score
Baseline 0.32 0.49 0.38 0.43 0.66 0.54
Soft dictionary 0.44 0.51 0.47 0.63 0.72 0.67
Rules 0.51 0.86 0.64 0.58 0.97 0.72
PathNER 0.80 0.74 0.77 0.88 0.81 0.84