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Table 1 Analysis of the relationships between E. coli hfq, dsrA, and cpxR genes

From: A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks

#

MeSH ID

Term name

hfq papers

dsrA papers

cpxR papers

1

D035001

host factor 1 protein

170

28

0

2

D015964

Gene Expression Regulation, Bacterial

121

36

49

3

D012333

RNA, Messenger

84

22

2

4

D022661

RNA, Untranslated

55

38

0

5

D012808

Sigma Factor

52

38

11

6

D011485

Protein binding

39

12

4

7

D014176

Protein Biosynthesis

37

16

1

8

D016601

RNA-binding Proteins

34

3

0

9

D014158

Transcription, Genetic

33

11

19

10

D001425

Bacterial Outer Membrane Proteins

31

11

20

11

D014157

Transcription Factors

24

6

13

12

D004268

DNA-Binding Proteins

22

10

3

13

D018832

Molecular Chaperones

17

3

24

14

D015536

Down-Regulation

11

0

1

15

D012270

Ribosomes

9

3

0

16

D006360

Heat-Shock Proteins

7

1

16

17

D033903

Periplasmic Proteins

1

0

13

  1. GenoMesh results: hfq vs dsrA: Dissimilarity: 0.0845. p-value: 0.0003, co-published papers: 39
  2. hfq vs cpxR: Dissimilarity: 0.2901. p-value: 0.0215, co-published papers: 0