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Table 2 ESPRIT and LSH-Div results for different cut-offs (Sample 112R)

From: 16S rRNA metagenome clustering and diversity estimation using locality sensitive hashing

  ESPRIT LSH-Div
k -mer distance # OTUs NW # OTUs NW / k -mer
0.01 2087 0.255 2382 0.0
0.02 1809 0.271 2111 0.014
0.03 1741 0.288 2111 0.014
0.04 1655 0.302 1927 0.032
0.05 1599 0.328 1795 0.048
0.06 1512 0.352 1795 0.048
0.07 1306 0.391 1666 0.065
0.08 1280 0.407 1666 0.065
0.09 1125 0.428 1579 0.081
0.10 1033 0.433 1506 0.098
  1. The results produced by ESPRIT using k-mer distance is assessed on Needleman-Wunsch (NW) global alignment distance. The results generated by LSH-Div is evaluated on ESPRIT's generated k-mer distance and NW distance. The parameter setting used by LSH-Div algorithm to obtain these results is k = 30, w-mer = 3.