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Table 2 ESPRIT and LSH-Div results for different cut-offs (Sample 112R)

From: 16S rRNA metagenome clustering and diversity estimation using locality sensitive hashing

 

ESPRIT

LSH-Div

k -mer distance

# OTUs

NW

# OTUs

NW / k -mer

0.01

2087

0.255

2382

0.0

0.02

1809

0.271

2111

0.014

0.03

1741

0.288

2111

0.014

0.04

1655

0.302

1927

0.032

0.05

1599

0.328

1795

0.048

0.06

1512

0.352

1795

0.048

0.07

1306

0.391

1666

0.065

0.08

1280

0.407

1666

0.065

0.09

1125

0.428

1579

0.081

0.10

1033

0.433

1506

0.098

  1. The results produced by ESPRIT using k-mer distance is assessed on Needleman-Wunsch (NW) global alignment distance. The results generated by LSH-Div is evaluated on ESPRIT's generated k-mer distance and NW distance. The parameter setting used by LSH-Div algorithm to obtain these results is k = 30, w-mer = 3.
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BMC Systems Biology

ISSN: 1752-0509

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