Table 2 The features used in DroshaSVM
From: A novel two-layer SVM model in miRNA Drosha processing site detection
ID | Name | Description |
|---|---|---|
1 | Loop_Distance | Distance from processing site candidate to loop of the hairpin structure. |
2~11 | Structure | Structure description of the candidate site and 9nt sites forward are paired or not. |
12~21 | Base | The base types of the candidate site and 9nt sites forward. |
22~31 | Probability | The base pairing probability of the candidate site and 9nt sites forward. |
32~41 | Entropy | The Shannon entropy of the candidate site and 9nt sites forward. |