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Table 2 Connections of the E. coli contigs by FINISH. The notations are the same as in Table 1.

From: OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly

Neighboring contigs

Gap size (bp)

Best contig path

Contig path length (bp)

Length difference

Correct

006+,091+

2326

006+:116+:091+

2327

1

1

004+,086+

10658

004+:005+:086+

10660

2

1

032-,046+

6058

032-:047+:046+

6056

2

1

044-,017+

11342

044-:047+:017+

11340

2

1

013+,061+

23861

013+:011-:053+:061+

23864

3

1

010+,069-

4003

010+:078+:069-

4007

4

1

050-,059-

17496

050-:116-:059-

17500

4

1

012-,036-

20629

012-:011+:036-

20635

6

1

086+,054-

6739

086+:117-:054-

6745

6

1

017+,012-

10239

017+:018+:012-

10246

7

1

029-,010+

38377

029-:015+:056+:116-:010+

38384

7

1

057-,079-

29696

057-:053-:011+:075+:111-:080-:079-

29703

7

1

023+,022+

40884

023+:117+:022+

40893

9

1

048+,044-

27181

048+:028+:044-

27191

10

1

002+,050-

25463

002+:015+:050-

25475

12

1

108+,062-

48785

108+:117-:062-

48800

15

1

120+,105-

57776

120+:115-:043-:103-:039+:104+:113-:100-:073-:105-

57885

109

0

059-,107-

15847

059-:078+:063+:092+:110-:027-:107-

15609

238

0*

062-,016+

11600

062-:015-:016+

11238

362

1

091+,067-

24244

091+:053-:011+:067-

23876

368

1

046+,120+

18124

046+:101+:084-:087-:025-:122-:120+

18753

629

1

054-,032-

41348

054-:101+:084-:087-:025-:122-:123-:118-:116-:032-

41983

635

1

076+,029-

10053

076+:028+:029-

9285

768

1

001+,023+

29005

001+:117+:023+

29788

783

0*

016+,033-

8649

016+:083+:033-

6842

1807

0*

069-,108+

113278

069-:116-:074+:082+:084-:087-:025-:122-:123-:088+:026-:092+:110-:027-:108+

111423

1855

0*

045+,057-

56400

045+:115-:043-:121-:024-:005+:003-:058+:119+:057-

46042

10358

0*

022+,002+

49821

022+:116-:002+

14242

35579

0

038-,076+

144606

038-:117+:111+:075-:011-:053+:021+:124+:014-:015-:076+

86949

57657

0*

085+,048+

122463

085+:116+:007-:111-:048+

52387

70076

0*