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Table 6 The top 10 most frequently participated internal reactions

From: Comparison on extreme pathways reveals nature of different biological processes

Part 1
The top 10 reactions with highest participation rate in the TRN
Order Reaction Participation Rate (%)
1 CRP_noGLC_1 9.18
2 Crp_1 8.99
3 NOT_PdhR_1 7.55
4 Fis_1 6.16
5 Lrp_1 4.09
6 Fnr_1 3.90
7 NOT_PurR_1 3.27
8 NOT_ArcA_1 3.02
9 NOT_Cra_1 2.83
10 NOT_Lrp_1 2.45
The top 10 reactions with highest participation rate in the sACL
Order Abbr. Reaction Name Participation Rate (%)
1 ASPTA aspartate transaminase 91.42
2 ASAD aspartate semialdehyde dehydrogenase 90.40
3 ASPK aspartate kinase 90.40
4 HSDy homoserine dehydrogenase NADPH 90.31
5 GHMT2r glycine hydroxymethyltransferase reversible 75.82
6 GLYAT glycine C acetyltransferase 68.22
7 HSK homoserine kinase 67.27
8 THRS threonine synthase 67.27
9 THRD L threonine dehydrogenase 59.23
10 FUM Fumarase 57.71
The top 10 reactions with highest participation rate in the sMM
Order Abbr. Reaction Name Participation Rate (%)
1 ACCOAC acetyl CoA carboxylase 75.08
2 MCOATA Malonyl CoA ACP transacylase 75.08
3 3HAD100 3 hydroxyacyl acyl carrier protein dehydratase n C100 74.48
4 3HAD40 3 hydroxyacyl acyl carrier protein dehydratase n C40 74.48
5 3HAD60 3 hydroxyacyl acyl carrier protein dehydratase n C60 74.48
6 3HAD80 3 hydroxyacyl acyl carrier protein dehydratase n C80 74.48
7 3OAR100 3 oxoacyl acyl carrier protein reductase n C100 74.48
8 3OAR40 3 oxoacyl acyl carrier protein reductase n C40 74.48
9 3OAR60 3 oxoacyl acyl carrier protein reductase n C60 74.48
10 3OAR80 3 oxoacyl acyl carrier protein reductase n C80 74.48
Part 2
The top 10 reactions with highest participation rate in the sTC
Order Abbr. Reaction Name Participation Rate (%)
1 tscr_elo_TU-8389_ini Formation complex for elongation of TU-8389' 0.65
2 tscr_elo_TU-8390_ini Formation complex for elongation of TU-8390' 0.65
3 tscr_elo_TU-8397_ini_rho_dep Formation complex for elongation of TU-8397 (RHO DEPENDENT TERMINATION)' 0.65
4 tscr_elo_TU-8407_ini_rho_dep Formation complex for elongation of TU-8407 (RHO DEPENDENT TERMINATION)' 0.65
5 tscr_elo_TU0-1181_ini_stab Formation complex for elongation of TU0-1181 (stable RNA)' 0.65
6 tscr_elo_TU0-1182_ini_stab Formation complex for elongation of TU0-1182 (stable RNA)' 0.65
7 tscr_elo_TU0-1183_ini_stab Formation complex for elongation of TU0-1183 (stable RNA)' 0.65
8 tscr_elo_TU0-1186_ini_stab Formation complex for elongation of TU0-1186 (stable RNA)' 0.65
9 tscr_elo_TU0-1187_ini_stab Formation complex for elongation of TU0-1187 (stable RNA)' 0.65
10 tscr_elo_TU0-1189_ini_stab Formation complex for elongation of TU0-1189 (stable RNA)' 0.65
The top 10 reactions with highest participation rate in the sTL
Order Abbr. Reaction Name Participation Rate (%)
1 IF2_RECHARG recharge of IF2 with GTP' 100
2 Rib_30_ini_FORM formation of 30S translation initiation complex (30S subunit, IF1, IF2-GTP, IF3)' 100
3 Rib_70_DISS 70S ribosome dissociation' 100
4 EF-G_RECHARG recharge of EF-G with GTP' 99.95
5 tl_elo_b3461_16_rib1 Translation elongation 1 b3461 16 ribosome(s)' 0.75
6 tl_elo_b3461_16_rib2 Translation elongation 2 b3461 16 ribosome(s)' 0.75
7 tl_elo_b3461_1_rib1 Translation elongation 1 b3461 1 ribosome(s)' 0.75
8 tl_elo_b3461_1_rib2 Translation elongation 2 b3461 1 ribosome(s)' 0.75
9 tl_elo_b3461_8_rib1 Translation elongation 1 b3461 8 ribosome(s)' 0.75
10 tl_elo_b3461_8_rib2 Translation elongation 2 b3461 8 ribosome(s)' 0.75