Table 6 The top 10 most frequently participated internal reactions
From: Comparison on extreme pathways reveals nature of different biological processes
Part 1 | |||
|---|---|---|---|
The top 10 reactions with highest participation rate in the TRN | |||
Order | Reaction | Participation Rate (%) | |
1 | CRP_noGLC_1 | 9.18 | |
2 | Crp_1 | 8.99 | |
3 | NOT_PdhR_1 | 7.55 | |
4 | Fis_1 | 6.16 | |
5 | Lrp_1 | 4.09 | |
6 | Fnr_1 | 3.90 | |
7 | NOT_PurR_1 | 3.27 | |
8 | NOT_ArcA_1 | 3.02 | |
9 | NOT_Cra_1 | 2.83 | |
10 | NOT_Lrp_1 | 2.45 | |
The top 10 reactions with highest participation rate in the sACL | |||
Order | Abbr. | Reaction Name | Participation Rate (%) |
1 | ASPTA | aspartate transaminase | 91.42 |
2 | ASAD | aspartate semialdehyde dehydrogenase | 90.40 |
3 | ASPK | aspartate kinase | 90.40 |
4 | HSDy | homoserine dehydrogenase NADPH | 90.31 |
5 | GHMT2r | glycine hydroxymethyltransferase reversible | 75.82 |
6 | GLYAT | glycine C acetyltransferase | 68.22 |
7 | HSK | homoserine kinase | 67.27 |
8 | THRS | threonine synthase | 67.27 |
9 | THRD | L threonine dehydrogenase | 59.23 |
10 | FUM | Fumarase | 57.71 |
The top 10 reactions with highest participation rate in the sMM | |||
Order | Abbr. | Reaction Name | Participation Rate (%) |
1 | ACCOAC | acetyl CoA carboxylase | 75.08 |
2 | MCOATA | Malonyl CoA ACP transacylase | 75.08 |
3 | 3HAD100 | 3 hydroxyacyl acyl carrier protein dehydratase n C100 | 74.48 |
4 | 3HAD40 | 3 hydroxyacyl acyl carrier protein dehydratase n C40 | 74.48 |
5 | 3HAD60 | 3 hydroxyacyl acyl carrier protein dehydratase n C60 | 74.48 |
6 | 3HAD80 | 3 hydroxyacyl acyl carrier protein dehydratase n C80 | 74.48 |
7 | 3OAR100 | 3 oxoacyl acyl carrier protein reductase n C100 | 74.48 |
8 | 3OAR40 | 3 oxoacyl acyl carrier protein reductase n C40 | 74.48 |
9 | 3OAR60 | 3 oxoacyl acyl carrier protein reductase n C60 | 74.48 |
10 | 3OAR80 | 3 oxoacyl acyl carrier protein reductase n C80 | 74.48 |
Part 2 | |||
The top 10 reactions with highest participation rate in the sTC | |||
Order | Abbr. | Reaction Name | Participation Rate (%) |
1 | tscr_elo_TU-8389_ini | Formation complex for elongation of TU-8389' | 0.65 |
2 | tscr_elo_TU-8390_ini | Formation complex for elongation of TU-8390' | 0.65 |
3 | tscr_elo_TU-8397_ini_rho_dep | Formation complex for elongation of TU-8397 (RHO DEPENDENT TERMINATION)' | 0.65 |
4 | tscr_elo_TU-8407_ini_rho_dep | Formation complex for elongation of TU-8407 (RHO DEPENDENT TERMINATION)' | 0.65 |
5 | tscr_elo_TU0-1181_ini_stab | Formation complex for elongation of TU0-1181 (stable RNA)' | 0.65 |
6 | tscr_elo_TU0-1182_ini_stab | Formation complex for elongation of TU0-1182 (stable RNA)' | 0.65 |
7 | tscr_elo_TU0-1183_ini_stab | Formation complex for elongation of TU0-1183 (stable RNA)' | 0.65 |
8 | tscr_elo_TU0-1186_ini_stab | Formation complex for elongation of TU0-1186 (stable RNA)' | 0.65 |
9 | tscr_elo_TU0-1187_ini_stab | Formation complex for elongation of TU0-1187 (stable RNA)' | 0.65 |
10 | tscr_elo_TU0-1189_ini_stab | Formation complex for elongation of TU0-1189 (stable RNA)' | 0.65 |
The top 10 reactions with highest participation rate in the sTL | |||
Order | Abbr. | Reaction Name | Participation Rate (%) |
1 | IF2_RECHARG | recharge of IF2 with GTP' | 100 |
2 | Rib_30_ini_FORM | formation of 30S translation initiation complex (30S subunit, IF1, IF2-GTP, IF3)' | 100 |
3 | Rib_70_DISS | 70S ribosome dissociation' | 100 |
4 | EF-G_RECHARG | recharge of EF-G with GTP' | 99.95 |
5 | tl_elo_b3461_16_rib1 | Translation elongation 1 b3461 16 ribosome(s)' | 0.75 |
6 | tl_elo_b3461_16_rib2 | Translation elongation 2 b3461 16 ribosome(s)' | 0.75 |
7 | tl_elo_b3461_1_rib1 | Translation elongation 1 b3461 1 ribosome(s)' | 0.75 |
8 | tl_elo_b3461_1_rib2 | Translation elongation 2 b3461 1 ribosome(s)' | 0.75 |
9 | tl_elo_b3461_8_rib1 | Translation elongation 1 b3461 8 ribosome(s)' | 0.75 |
10 | tl_elo_b3461_8_rib2 | Translation elongation 2 b3461 8 ribosome(s)' | 0.75 |