Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets

BMC Systems Biology

Table 3 SNPs measured by the Sty microarray using PC3 for genotype and PC4 for DNA methylation.

The 37 selected SNPs (probes) that exhibited significant difference between blood, and normal and tumor tissues, within the top N (= 50, 100, 150, 200, 250, and 300) outliers for both DNA methylation and genotype. Top 300 outliers are shown in red in Figures 6a and 6d. For detailed annotations, including associated genes, of the selected SNPs, see Additional file 1 (sheet name Sty2).

ISSN: 1752-0509