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Table 3 SNPs measured by the Sty microarray using PC3 for genotype and PC4 for DNA methylation.

From: Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets

Rank SNPs  
50 SNP_A-1879798 SNP_A-4261939 SNP_A-4288122 SNP_A-1906431
100 SNP_A-1781703
SNP_A-4254588
SNP_A-2291931
SNP_A-4257840
SNP_A-1827527
SNP_A-1893004
SNP_A-1990707
SNP_A-2272342
SNP_A-1859078
SNP_A-2092003
SNP_A-2264321
150 SNP_A-4292799
SNP_A-2188211
SNP_A-4285002
SNP_A-4263960
SNP_A-2295075 SNP_A-2176803
200 SNP_A-4275514
SNP_A-4279597
SNP_A-4242077
SNP_A-4288260
SNP_A-2073412
SNP_A-4300538
SNP_A-1793920
250 SNP_A-4258351
SNP_A-4269967
SNP_A-2207678
SNP_A-1811356
SNP_A-4277760 SNP_A-1834280
300 SNP_A-4258451 SNP_A-4302014 SNP_A-4293935  
  1. The 37 selected SNPs (probes) that exhibited significant difference between blood, and normal and tumor tissues, within the top N (= 50, 100, 150, 200, 250, and 300) outliers for both DNA methylation and genotype. Top 300 outliers are shown in red in Figures 6a and 6d. For detailed annotations, including associated genes, of the selected SNPs, see Additional file 1 (sheet name Sty2).