Method | Nsp | Sty |
|---|
| Â | Â | (Sty1 | Â | Sty2) |
|---|
Present | 68 | 81 | Â | 50 |
Pearson | 49 | Â | 14 | Â |
Spearman | 39 | Â | 18 | Â |
PLS | 7 | Â | 13 | Â |
Stepclass | -- | Â | -- | Â |
lasso | -- | Â | -- | Â |
- The number of SNPs selected in common between the top-ranked 300 SNPs in genotype and DNA methylationusing various methods. Present, this study; Pearson, Pearson correlation coefficients based method; Spearman, Spearman correlation coefficients based method; PLS, partial least squares based method; Stepclass, stepclass (R function that executes iterative feature selection) based method; and lasso: Lasso based method. Nsp and Sty are the microarray data sets used in the study. Sty1 and Sty2 correspond to the PC4 for genotype (Figures 4d and 6b)/PC3 for DNA methylation (Figures 5c and 6c) and the PC3 for genotype (Figures 4c and 6a)/PC4 for DNA methylation (Figures 5d and 6d) combinations of PCs.
