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Table 1 Contributions of features.

From: A graph kernel method for DNA-binding site prediction

Features

PSSM1

E_P2

Ent3

StrCn4

rASA5

Cur6

Poc7

All8

Accuracy (%)

86.9

77.0

67.5

54.7

54.5

54.1

54.1

88.7

  1. 1 PSSM: position-specific scoring matrix; 2 E_P: electrostatic potential; 3 Ent: sequence entropy; 4 StrCn: structural conservation; 5 rASA: relative solvent accessibility; 6 Cur: surface curvature; 7 Poc: size of the pocket where the residue is located; and 8 All: all the seven attributes were used.
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BMC Systems Biology

ISSN: 1752-0509

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