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Table 3 Statistics of the ten 7-mers that were identified to be important for high-affinity 12-mers through Round 1.

From: Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels

Rank 7-mer Freq. MIN MAX Average Standard
Deviation
1 ATGACTC 419 8.49 409.08 39.31 43.04
2 TGACTCA 990 8.49 567.81 56.66 54.61
3 GTGACTC 446 9.83 648.79 74.46 96.84
4 TGAGTCA 453 14.52 303.87 63.66 54.64
5 TATGACT 224 8.74 896.78 112.54 190.25
6 GACTCAT 392 8.49 963.28 167.26 254.46
7 ATGAGTC 504 15.60 975.18 276.01 292.93
8 TGACTAA 327 14.67 821.67 192.02 199.69
9 TACTCAC 847 9.65 975.05 437.92 336.43
10 GACTAAT 808 14.67 984.67 528.74 300.75
  1. The seven columns list the rank of importance, nucleotide sequence, number of 12-mer sequences that contain this 7-mer, the minimum K d for all such 12-mers, the maximum K d for all such 12-mers, the mean K d value for these 12-mers, and the standard deviation of these 12-mers, respectively. The six 7-mers in bold are the ones with lower dispersions of K d values than the remainders.