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Table 1 BiCluster Quality Score on M. pneumoniae (MPN)

From: Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions

 

Non-BSCM

BSCM

Significance

p-value

n

125

125

 

Score

-12.26

-12.34

2.40E-003

Improved Score

75/125

50/125

9.84E-003

Mean p-value

0.129

0.109

2.20E-016

cMonkey Version

4.8.2

4.8.2

 
  1. Non-BSCM refers to cMonkey runs that used the classical cMonkey cluster coherence score. BSCM refers to the new coherence p-value discussed in this paper. n refers to the number of cMonkey runs. Score refers to the average cluster score used to determine bicluster quality in cMonkey (lower is better). Improved Score refers to the number of cMonkey runs in which a coherence scoring method has a lower Score. Mean p-value refers to the average p-value for all experiments in all clusters for all cMonkey runs. Significance p-value compares the old to the new using a t- test for Score, binomial distribution for Improved Score, and t-test for Mean p-value.
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BMC Systems Biology

ISSN: 1752-0509

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