
NonBSCM

BSCM

Significance
pvalue


n

125

125
 
Score

12.26

12.34

2.40E003

Improved Score

75/125

50/125

9.84E003

Mean pvalue

0.129

0.109

2.20E016

cMonkey Version

4.8.2

4.8.2
 
 NonBSCM refers to cMonkey runs that used the classical cMonkey cluster coherence score. BSCM refers to the new coherence pvalue discussed in this paper. n refers to the number of cMonkey runs. Score refers to the average cluster score used to determine bicluster quality in cMonkey (lower is better). Improved Score refers to the number of cMonkey runs in which a coherence scoring method has a lower Score. Mean pvalue refers to the average pvalue for all experiments in all clusters for all cMonkey runs. Significance pvalue compares the old to the new using a t test for Score, binomial distribution for Improved Score, and ttest for Mean pvalue.