Table 1 Properties of the five test models before and after compression
From: A depth-first search algorithm to compute elementary flux modes by linear programming
Model ID | Biomass drains (number of drains) | Before compression | After compression | ||||
|---|---|---|---|---|---|---|---|
rxns. | mets. | DoF | rxns. | mets. | DoF | ||
subaa | Ala, Asp, Glu, His, Ile, Leu, Lys, Phe, Ser, Val (10) | 209 | 180 | 57 | 42 | 25 | 23 |
aa | all amino acids (20) | 260 | 221 | 68 | 59 | 30 | 36 |
aarna | aa and RNA (24) | 289 | 242 | 73 | 69 | 32 | 41 |
aant | aarna and DNA (28) | 312 | 256 | 83 | 74 | 32 | 46 |
aantpe | aant and phospholipids (32) | 379 | 317 | 90 | 82 | 35 | 51 |
reduced iAF1260 | all biomass components (62) | 561 | 454 | 128 | 121 | 41 | 80 |