BCM: toolkit for Bayesian analysis of Computational Models using samplers

BMC Systems Biology

Table 1 Sampling algorithms and extensions implemented in BCM

Sampling algorithm	Reference
Markov Chain Monte Carlo	[6, 7]
Parallel tempering	[10]
Adaptive proposals	[11]
Feedback-optimized temperatures	[12]
Thermodynamic integration	[13]
Automated parameter blocking	[14]
Sequential Monte Carlo	[8]
MCMC proposals	[8]
Kernel density estimate proposals	[8]
Automated temperature schedule	[15]
Nested sampling	[9]
MCMC proposals	[9]
Ellipsoid proposals	[16]
MultiNest	[5]

ISSN: 1752-0509