Table 1 Patch generation thresholds
From: A novel index of protein-protein interface propensity improves interface residue recognition
A The ASA and distance with seed residue of patch residue | |
Distance(Ã…) | ASA(> Ã…2) |
(2,5) | 0 |
(5,7) | 20 |
(7,9) | 40 |
(9,11) | 60 |
(11,13) | 80 |
(13,15) | 100 |
B Thresholds for patch merging | |
Domain ASA(Ã…2) | Identity Ratio |
(0,5000) | 0.8 |
(5000,7500) | 0.7 |
(7500,10000) | 0.6 |
(10000,+ ∞) | 0.5 |