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Table 1 Running time of MORO

From: MORO: a Cytoscape app for relationship analysis between modularity and robustness in large-scale biological networks

Number of considered initial-states (S)

Single CPU (A)

Multi-core CPU (B)

Speedup (A/B)

GPU (C)

Speedup (A/C)

HSN network

 50

467:00:15

00:10:13

2744

00:09:58

2925

 100

934:52:07

00:20:01

5488

00:19:16

5850

 150

1401:47:01

00:30:39

8232

00:28:75

8775

 200

1869:03:03

00:40:52

10976

00:38:38

11700

 1000

9345:16:06

03:24:33

54880

03:11:01

58500

STKE network

 50

01:22:50

00:00:06

825

00:00:13

380

 100

02:45:00

00:00:10

990

00:00:24

412

 150

04:07:15

00:00:14

1060

00:00:35

424

 200

05:30:00

00:00:18

1100

00:00:46

430

 1000

27:30:00

00:01:27

1137

00:03:40

450

  1. A total of running time to compute robustness and modularity is compared among single-CPU, multi-core CPU, and GPU options. Time is formatted as hh:mm:ss