Fig. 6
From: Unearthing the transition rates between photoreceptor conformers
Optimal photoconversion cross-sections obtained for phyB-N. a Optimal photoconversion cross-sections (solid lines) compared to the ‘Mancinelli spectra’ (dashed lines) calculated for full-length phytochromes. Note the change in y-axis. b Search spaces calculated for the extinction coefficients using the Vermémeglio method as a function of X 1 and X 2. c Comparison of optimal quantum yields (denoted ‘Opt’) compared to the ‘Mancinelli quantum yields’ (denoted ‘Mancinelli’). d Simulated absorption spectra (red lines) compared to the synthetic data (black lines). e Profile likelihoods for the parameters obtained from our optimisation algorithm. f The search space for the optimal quantum yields