Skip to main content

Table 7 Variables and notations used in simulations

From: The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

Variables

Identifiers

Sets

Indices

α: allocation coefficient

‘: uncorrected value

\( \mathcal{C} \): consumers

γ: consumer of glycogen/consumer cell in allocation

C: concentration

0: initial

\( \mathcal{P} \): producers

c: producer of glycogen

f: fraction of cell type

γ: consumed metabolite for photoautotroph

\( \mathcal{S} \): seawater nutrients

i: species

\( \widehat{\mu} \): maximum growth rate

c: produced metabolite for photoautotroph

 

μ: consumer of ammonium

μ: growth rate

chIL: nitrogenase

 

n: producer of ammonium

ν: flux

cons: consumer

 

Ï€: producer cell in allocation

N: number of steps

δ: differentiation pool

  

σ: portion control for allocation

DZ: diazotroph

  

S: stoichiometric matrix

f: final

  

t: time

m: metabolite

  

X: biomass

n: step

  

Y N → Env : fraction of nitrogen released to the environment

PA: photoautotroph

  
 

prod: producer

  
 

PSI/II: Photosystem I/II

  
 

T: total

 Â