Table 2 Ensembles of feasible vectors generated with different schemes
From: Predicting network modules of cell cycle regulators using relative protein abundance statistics
Ensemble | Scheme | Ensemble | Selection of | Feasibility criteria | # generations | # | S |
|---|---|---|---|---|---|---|---|
# | # | size | the initial DE | used in selection | per DE run | DE runs | (Range of |
population from | step of DE | predictions) | |||||
Ensemble 1 | |||||||
1 | 3146 | - | Parameter vectors | Ensemble generated | - | 30 | |
satisfy F C 1 | in optimization [22] | ||||||
2 | 1 | 243 | - | Parameter vectors | Ensemble extracted | - | 51 |
satisfy F C 1 | from 50,000 | ||||||
LHS samples | |||||||
3 | 2 | 7143 | Randomly selected | F C 1 | 400 | 1 | 6 |
parameter vectors | |||||||
4 | 3 | 1893 | V max (10) | F C 1 | 400 | 1 | 41 |
5 | 4 | 1594 | V max (10) | F C 1 and F C 2 | 1600 | 1 | 64 |
6 | 4 | 1326 | V max (10) | F C 1 and F C 2 | 1600 | 1 | 69 |
7 | 5 | 3405 | V max (123) | F C 1 and F C 2 | 1600 | 1 | 94 |
8 | 5 | 3753 | V max (123) | F C 1 and F C 2 | 1600 | 1 | 80 |
9 | 6 | 2207 | S max & V max (123) | F C 1 and F C 2 | 1600 | 1 | 117 |
10 | 6 | 1842 | S max & V max (123) | F C 1 and F C 2 | 1600 | 1 | 95 |
11 | 7 | 3704 | S max & V max (123) | F C 1, F C 2, and F C 3 | 1600 | 1 | 112 |
12 | 7 | 3481 | S max & V max (123) | F C 1, F C 2, and F C 3 | 1600 | 1 | 133 |
13 | 8 | 4280 | S max & V max (123) | F C 1 and F C 3 | 1600 | 1 | 313 |
14 | 8 | 4550 | S max & V max (123) | F C 1 and F C 3 | 1600 | 1 | 367 |
15 | 7 | 15520 | S max & V max (123) | F C 1, F C 2, and F C 3 | 2200 | 4 | 293 |
16 | 8 | 15050 | S max & V max (123) | F C 1 and F C 3 | 2200 | 4 | 671 |