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Table 3 The summary of specificities for the four compared methods under different significant levels (α) and proportions of reproducible genes (γ)

From: Quantitative reproducibility analysis for identifying reproducible targets from high-throughput experiments

  The proposed Method The copula mixture method [10] Benjamini & Heller method [9] The rank product method [8]
  α=0.1 α=0.05 α=0.1 α=0.05 α=0.1 α=0.05 α=0.1 α=0.05
γ=80% 0.996(0.002) 0.997(0.0017) 0.009(0.0058) 0.025(0.0152) 0.994(0.0021) 0.999(0.001) 1(0) 1(0)
γ=60% 0.998(9e-04) 0.999(7e-04) 0.029(0.0075) 0.057(0.0144) 0.997(0.0015) 0.999(7e-04) 1(0) 1(0)
γ=40% 0.999(7e-04) 0.999(6e-04) 0.07(0.0136) 0.139(0.0268) 0.999(7e-04) 1(4e-04) 1(0) 1(0)
γ=20% 0.999(4e-04) 0.999(3e-04) 0.999(9e-04) 1(4e-04) 1(3e-04) 1(1e-04) 1(0) 1(0)
γ=10% 0.999(4e-04) 1(3e-04) 1(1e-04) 1(1e-04) 1(1e-04) 1(1e-04) 1(2e-04) 1(1e-04)
γ=5% 1(3e-04) 1(3e-04) 1(1e-04) 1(0) 1(1e-04) 1(0) 1(3e-04) 1(1e-04)
γ=1% 1(3e-04) 1(3e-04) 1(1e-04) 1(0) 1(0) 1(0) 1(4e-04) 1(2e-04)