Table 1 The main model parameters and their recommended values based on this study
From: Use of transcriptomic data for extending a model of the AppA/PpsR system in Rhodobacter sphaeroides
Model Parameters | Biological Meaning | Recommended Values |
|---|---|---|
α | Compares the rate of re-oxidation of PpsR with that of AppA | 6 |
β | Compares the rate of reduction of PpsR with that of AppA | 500 |
γ | Ratio of the concentration of AppA and PpsR in a single cell | 2.1 |
PpsRtotal | Total concentration of PpsR | ≈100 nM |
KO | Compares the rate of reduction of AppA with its rate of oxidation | ≈ 6.7–12.7 μM |
I | Blue Light Irradiance | 0.001 |