Identification of regulatory modules in genome scale transcription regulatory networks

BMC Systems Biology

Table 1 AUC for CoReg with different similarity index and Walk Trap. Highest values in each row is in bold

Species	Rewiring probability	CoReg inv	CoReg jaccard	CoReg geometric	WT (4 steps)	WT (2 steps)
A. thaliana	0.1	0.859 ± 0.035	0.957 ± 0.017	0.972 ± 0.014	0.597 ± 0.049	0.556 ± 0.033
A. thaliana	0.3	0.823 ± 0.031	0.939 ± 0.010	0.910 ± 0.036	0.548 ± 0.048	0.526 ± 0.027
A. thaliana	0.5	0.794 ± 0.035	0.872 ± 0.034	0.866 ± 0.031	0.531 ± 0.027	0.505 ± 0.038
E. coli	0.1	0.849 ± 0.048	0.968 ± 0.022	0.963 ± 0.013	0.611 ± 0.030	0.971 ± 0.020
E. coli	0.3	0.813 ± 0.037	0.930 ± 0.023	0.919 ± 0.027	0.557 ± 0.035	0.827 ± 0.034
E. coli	0.5	0.819 ± 0.033	0.865 ± 0.024	0.878 ± 0.039	0.555 ± 0.028	0.683 ± 0.060
H. sapiens	0.1	0.914 ± 0.037	0.999 ± 0.001	0.999 ± 0.002	0.500 ± 0.033	0.512 ± 0.025
H. sapiens	0.3	0.919 ± 0.035	0.994 ± 0.007	0.991 ± 0.008	0.516 ± 0.016	0.489 ± 0.025
H. sapiens	0.5	0.918 ± 0.032	0.983 ± 0.010	0.983 ± 0.008	0.512 ± 0.027	0.503 ± 0.025

ISSN: 1752-0509