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Table 1 AUC for CoReg with different similarity index and Walk Trap. Highest values in each row is in bold

From: Identification of regulatory modules in genome scale transcription regulatory networks

Species Rewiring probability CoReg inv CoReg jaccard CoReg geometric WT (4 steps) WT (2 steps)
A. thaliana 0.1 0.859 ± 0.035 0.957 ± 0.017 0.972 ± 0.014 0.597 ± 0.049 0.556 ± 0.033
A. thaliana 0.3 0.823 ± 0.031 0.939 ± 0.010 0.910 ± 0.036 0.548 ± 0.048 0.526 ± 0.027
A. thaliana 0.5 0.794 ± 0.035 0.872 ± 0.034 0.866 ± 0.031 0.531 ± 0.027 0.505 ± 0.038
E. coli 0.1 0.849 ± 0.048 0.968 ± 0.022 0.963 ± 0.013 0.611 ± 0.030 0.971 ± 0.020
E. coli 0.3 0.813 ± 0.037 0.930 ± 0.023 0.919 ± 0.027 0.557 ± 0.035 0.827 ± 0.034
E. coli 0.5 0.819 ± 0.033 0.865 ± 0.024 0.878 ± 0.039 0.555 ± 0.028 0.683 ± 0.060
H. sapiens 0.1 0.914 ± 0.037 0.999 ± 0.001 0.999 ± 0.002 0.500 ± 0.033 0.512 ± 0.025
H. sapiens 0.3 0.919 ± 0.035 0.994 ± 0.007 0.991 ± 0.008 0.516 ± 0.016 0.489 ± 0.025
H. sapiens 0.5 0.918 ± 0.032 0.983 ± 0.010 0.983 ± 0.008 0.512 ± 0.027 0.503 ± 0.025
  1. CoReg inv.: CoReg + inverse log weighted similarity index
  2. CoReg jaccard: CoReg + jaccard similarity index
  3. CoReg geometric: CoReg + geometry similarity index
  4. WT: Walk Trap